I'm converting my HD DVD's to BluRay (movie only on DVD9). I've successfully ripped and converted and HDDVD (the Matrix) to a bluray file structure on my HDD and I can play this just fine. I converted this file structure to a bluray ISO which also mounts and plays fine.

But when I use BD Rebuilder to resize the ISO to fit on DVD9, the resulting file structure has a vertical displacement of color versus brightness. Hard to describe. But the falling symbols in the opening of the Matrix, the lead letter of each falling column is white and the trailing letters are green. A small strip at the bottom of the screen is in black & white.

Any clues as to what's causing my issue?

Program flow:
AnyDVD on
EVOdemux(v0.63) to rip to HDD (movie only)
vc1conv to convert .mpv video to .vc1
eac3to to convert .mpa audio to .ac3
tsMuxer (v1.10.6) to convert to .ts
tsRemuxer (v0.0.21.2) to convert .ts to a bluray structure