Hello. I seem to have encountered a problem with some subtitles I've extracted. It's from an anime I've gotten, and it's in mkv format. The subtitles play fine when it's in the mkv format. I convert them into mp4 format to watch them on my PS3. Anyway, I extract them with MKVExtractGUI and I open the episode in XviD4PSP to convert. I add the subtitles in and then preview to make sure the subtitles are correct. They start off fine at first, but during the opening the subtitles that are supposed to play after the opening play during the opening and it throws the entire episode off.

I opened the subtitles in Aegisubs and it said that everything is timed properly. There's line 1 that has nothing in it from 48 seconds to 2:44, and line 15 starts at 49 seconds in but line 1 is supposed to stop it from appearing, correct? So, I was wondering if anyone knew how I could fix this. Any help would be greatly appreciated. Also, I've never encountered this problem until recently.