Using DVD2ONE to convert a DVD with multiple angles and keeping menus was not working. DVD2ONE can only convert one angle but the original ifo file,which must be used to preserve menus seemed to cause a problem. The DVD-R would play but would freezeup.
The I found around this problem is to use IFOEDIT0.95 as the first step after ripping the DVD in file mode. Move the movie vob's and their ifo file into a separate directory. Then use IFOEDIT 0.95 to strip all but angle one. The new directory will contain the stripped vob's but more important it will contain a new ifo file without angle references. Move the new ifo file that IFOEDIT 0.95 created into your DVD directory and use it when you update with Make-It-Easy and the disk will play normally with all original menus and extras.