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Mkvtoolnix doesn't even encode, it just places the existing streams in a new (mkv) container
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If Mediainfo lists AVC "encoding settings" then it is possible using ffmpeg x264 options. It is very complex ,however, setting some options, changing some, renaming some and dropping others.
I do this a lot to encode parts of a video not starting at a key frame and then joining to the copied portion. It is, as ive said, a complex process that needs a utility that reads encoding settings and outputs x264 options that correspond. -
For the encoding settings, if your video uses x264 - Selur wrote a program called mis2x264 that parses mediainfo reported encoding settings and gives you the x264 cli string
https://github.com/Selur/Mis2x264
As mentioned above, encoding has nothing to do with mkvmerge. Mkvmerge just mutliplexes and cannot encode -
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Actually mis2x265, but the date is 2015, a lot has changed since then for x265 - probably many switches are not reflected. You can request an update
https://www.videohelp.com/software/Mis2x265
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