I have an mkv that I am using mkvtoolnix to embed an SSA except when I play the new embedded mkv the subtitles do not display. I have done this hundreds of times in the past with no problems but there is something funky with this particular mkv because when I embedded the same SSA with a different mkv movie, the subtitles displayed. Is there a way to cleanse or strip an mkv? I have no idea what it is about this particular mkv file but very frustrating.
		
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	You could try demux the video stream and audio streams with gMKVExtractGUI and then multiplex back everything. 
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