Is it possible to convert videos to WebM?
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ffmpegX doesn't provide settings to encode to .webm, but ffmpeg does.
If you want a Mac GUI, have a look at iFFmpeg.
If command line fits your workflow, have a look at the pre-compiled up-to-date ffmpeg binaries for Mac OS X at osxffmpegcompiling available for download. (iFFmpeg will need such a binary to interface with in the background, as well.)