I posted once before, and I was given a prompt answer, however it was pretty basic and didn't give any in depth details on what and how. I detailed what I was looking to do and then also posted a follow up, but hadn't heard back from the person whom responded, so I figured I would repost and see if anyone else had some ideas. Thanks
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Most of the time I just extract the MPEG-2 file from the VOBs and start over. But there are other ways. I use VOB2MPEG for extractions. But if you need more information on using programs like TMPGEnc DVD Author, just go to the toolpage for that program and look to the bottom of the page for guides for the program.