VirtualdubMOD doesn't work with all types of MKV and OGM video. But you can use:
MKVExtractGUI to extract video, audio and subtitle from MKV files.
OGMDemuxer tool to extract video, audio and subtitle. It is a command line tool but just drag and drop the .ogm file on the OGDemuxer.exe and it will separate all files automatically.
After that continue from the Multiplex/Join the video,audio in the guide above. But you must first convert the ogg audio to mp3, you can use for example dbpoweramp.
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